COVID-19 Data Science Resources

The Academic Data Science Alliance is working with partners to pull together data and data science resources related to the COVID-19 pandemic. This is a living list of resources and we welcome additions, suggestions, and collaborations. Please send additions, corrections, comments, and suggestions to us using this feedback form.

Please keep suggestions limited to research and data resources, avoiding opinion pieces and teaching resources.

Note that the resources listed here are provided as-is. Use your professional judgement and best practices to vet these resources before you use them for research and scientific communications.


Datasets

UVA Biocomplexity Institute - COVID-19 Datasets

Corona Data Scraper - contributed and curated data sources for COVID-19 tracking

COVID-19 Tracking Project - managed by Alexis Madrigal from The Atlantic - tracks US state-by-state COVID-19 progression

Johns Hopkins University Coronavirus - COVID-19 Global Cases, by country

Wikidata WikiProject COVID-19 - Project to collect Wikidata resources related to COVID-19 and SARS-CoV-2. Resources may also relate to relevant epidemiological events like 2019–20 COVID-19 pandemic

NYTimes Github Repo


Analytical Tools

COVID analyses for R - This repository links to a collection of analyses on and representations of COVID19 data in R

Quantified Flu - citizen science project that tries to address the question of whether our wearables can warn us when we’re getting sick


Academic Research Article Collections

Semantic Scholar - Open Research Dataset (article corpus) and a searchable front-end for this corpus

Publisher Access Changes for COVID-19 - librarian curated collection of access changes academic publishers have put in place to facilitate access to COVID-19 related literature

UVA Biocomplexity Institute - COVID-19 Publications and Presentations

Outbreak Science Rapid PREreview - rapid peer review for preprints from a number of preprint sources

University of California, San Francisco - a repository of papers related to COVID-19 scanning 1300+ PubMed articles


Events

Henry Wheeler Center for Emerging & Neglected Diseases (CEND) Hackathon - March 25-26, 2020


Challenges

White House OSTP Call for Machine Readable COVID-19 data - combines the Allen Institute corpus (see below) with a call for tools to parse data therein

Montreal General Hospital Foundation: Code Life Ventilator Challenge


Funding Opportunities

(we are grateful to NYU's Office of Research for many of these links)

US National Institutes of Health

US National Science Foundation

American Heart Association

Department of Energy Dear Colleagues Letter 3/12/20 [pdf]

Centers for Disease Control COVID-19 Broad Agency Announcement

Wellcome: Epidemic Preparedness: COVID-19 funding call

COVID-19 Therapeutics Accelerator (Gates, Wellcome, Mastercard)

Department of Defense: Medical Technology Enterprise Consortium (MTEC)-Presolicitation-COVID-19

Gordon & Betty Moore Foundation: Diagnostic Excellence Initiative (not COVID-specific)

Chan Zuckerberg Initiative: CZI Coronavirus Response

AWS Diagnostic Development Initiative (DDI)

MIT SOLVE Health Security and Pandemics

COVID-19 High-Performance Computing Consortium - industry, government, and academic consortium to provide funding and resources for COVID-19 response


Data Visualizations

Financial Times COVID-19 Visualizations

An interactive visualization of the exponential spread of COVID-19

UVA Biocomplexity Institute - COVID-19 Dashboards


Computing Resources

COVID-19 High-Performance Computing Consortium - industry, government, and academic consortium to provide funding and resources for COVID-19 response


Research Tracking

Social Science Research Project Tracker


Support Networks

Open Source Software helpdesk for COVID-19 - community of open source software experts who can assist with software issues for COVID-19 research

Data Against Covid - Discourse list for COVID-19 data science help

US Digital Response - pairing government entities with data scientists and teams


Other Collections of Resources

Columbia University Libraries Health Data Guide (including data sets)

NYU Center for Data Science

Github Blog Post

Chan Zuckerberg Initiative

University of Virginia Biocomplexity Institute


Thank you to our partners at Columbia University, New York University, UC San Francisco, University of Washington, and UC Berkeley for their contributions